Arsenal

Premier League: 1997–98, 2001–02, 2003–04
FA Cup: 1997–98, 2001–02, 2002–03, 2004–05
FA Community Shield: 1998, 1999, 2002

Inter Milan

Serie A: 2006–07, 2007–08, 2008–09
Supercoppa Italiana: 2006, 2008

Manchester City

FA Cup: 2010–11

France

FIFA World Cup: 1998
UEFA European Championship: 2000
FIFA Confederations Cup: 2001  

Division 1 Rookie of the Year: 1995
UEFA European Championship Team of the Tournament: 2000
FIFA Confederations Cup Silver Ball: 2001
FIFA World Cup All-star team: 2006
PFA Team of the Year: 1998–99 Premier League, 1999–2000 Premier League, 2000–01 Premier League, 2001–02 Premier League, 2002–03 Premier League, 2003–04 Premier League
Premier League Player of the Season: 2000–01
UEFA Team of the Year: 2001
French Player of the Year: 2001
Premier League Overseas Team of the Decade: 1992–93 – 2001–02
Premier League Overall Team of the Decade: 1992–93 – 2001–02
FIFA 100: 2004
Sports Illustrated Team of the Decade: 2009
Équipe type spéciale 20 ans des trophées UNFP: 2011
English Football Hall of Fame: 2014
Golden Foot Legends Award: 2019  

Player

Perugia Youth

Trofeo Giacinto Facchetti: 1995–96

AC Milan

Serie A: 2003–04, 2010–11
Coppa Italia: 2002–03
Supercoppa Italiana: 2004, 2011
UEFA Champions League: 2002–03, 2006–07
UEFA Super Cup: 2003, 2007
FIFA Club World Cup: 2007

Italy U21

UEFA Under-21 European Championship: 2000

Italy

FIFA World Cup: 2006  

FIFA World Cup All-Star Team: 2006
Premio Nazionale Carriera Esemplare "Gaetano Scirea": 2012
FIFPro World XI: Nominee 2005, 2006, 2007, 2008
AC Milan Hall of Fame  

Player

Ajax

Eredivisie: 1993–94, 1994–95, 1995–96
KNVB Cup: 1992–93, 2006–07
Johan Cruyff Shield: 1995
UEFA Champions League: 1994–95
UEFA Cup: 1991–92
UEFA Super Cup: 1995
Intercontinental Cup: 1995

Juventus

Serie A: 1997–98, 2001–02, 2002–03
Supercoppa Italiana: 2002, 2003

Inter Milan

Coppa Italia: 2004–05

Netherlands

FIFA World Cup fourth place: 1998
 

UEFA European Championship Team of the Tournament: 2000
FIFA World Cup All-Star Team: 1998
FIFA 100  

As a player

Nottingham Forest

Full Members' Cup: 1991–92

Manchester United

Premier League: 1993–94, 1995–96, 1996–97, 1998–99, 1999–2000, 2000–01, 2002–03
FA Cup: 1993–94, 1995–96, 1998–99, 2003–04
FA Community Shield: 1993, 1996, 1997, 2003
UEFA Champions League: 1998–99
Intercontinental Cup: 1999

Celtic

Scottish Premier League: 2005–06
Scottish League Cup: 2005–06
 

PFA Team of the Year: 1992–93 Premier League, 1996–97 Premier League, 1999–2000 Premier League, 2000–01 Premier League, 2001–02 Premier League
PFA Team of the Century: (1907–2007)
Team of the Century 1997–2007
Overall Team of the Century
FAI Young International Player of the Year: 1993, 1994
FAI Senior International Player of the Year: 1997, 2001
Premier League Player of the Month: October 1998, December 1999
Sir Matt Busby Player of the Year: 1999, 2000
RTÉ Sports Person of the Year: 1999
FWA Footballer of the Year: 2000
PFA Players' Player of the Year: 2000
ESM Team of the Year: 1999–2000
Premier League 10 Seasons Awards: (1992–93 to 2001–02)
Overseas Team of the Decade
English Football Hall of Fame: 2004
FIFA 100
Premier League 20 Seasons Awards: (1992–93 to 2011–12)
Fantasy Teams of the 20 Seasons (Panel choice)
Premier League Hall of Fame: 2021